Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1DD6 Chain:B ((4-220))
---------------------LPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNES--------
General information:
TITO was launched using:
RESULT:
Template:
1DD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96689 for 1923 contacts (-50.3/contact) +
2D Compatibility (PS) -23927 + (NN) -13927 + (LL) 2060
1D Compatibility (HY) -31200 + (ID) 10850
Total energy: -174533.0 ( -90.76 by residue)
QMean score : 0.755
(partial model without unconserved sides chains):
PDB file :
Tito_1DD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD6-query.scw
PDB file :
Tito_Scwrl_1DD6.pdb
: