Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
4F2P Chain:B ((17-248))
MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKLAHG
General information:
TITO was launched using:
RESULT:
Template:
4F2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178158 for 2092 contacts (-85.2/contact) +
2D Compatibility (PS) -25411 + (NN) -17960 + (LL) 0
1D Compatibility (HY) -32000 + (ID) 10350
Total energy: -263879.0 ( -126.14 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4F2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F2P-query.scw
PDB file :
Tito_Scwrl_4F2P.pdb
: