Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4LI6 Chain:B ((9-211))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAY--GMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPE---
General information:
TITO was launched using:
RESULT:
Template:
4LI6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64672 for 1580 contacts (-40.9/contact) +
2D Compatibility (PS) -22133 + (NN) -10479 + (LL) 8
1D Compatibility (HY) -26400 + (ID) 10000
Total energy: -133676.0 ( -84.61 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4LI6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LI6-query.scw
PDB file :
Tito_Scwrl_4LI6.pdb
: