Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDTGPDQSYFSGNHWFVFSVYLLTFLVGLPLNLLALVVFVGKLRCRPVAVDVLLLNLTASDLLLLLF--LPFRMVEAANGMHWPLPFILCPLSGFIFFTTIYLTALFLAAVSIERFLSVAHPLWYKTRPRLGQAGLVSVACWLLASAHCSVVYVIEFSGDISHSQGTNGTCYLEFWKDQL-AILLPVRLEMAVVLFVVPLIITSYCYSRLVWILGRGGS--------------------HRRQRRVAGLVAATLLNFLVCFGPYNVSHVVGYICGE---SPVWRIYVTLLSTLNSCVDPFVYYFSSSGFQADFHELLRRLCGLWGQWQQESSMELKEQKGGEEQRADRPAERKTSEHSQGCGTGGQVACAEN |
2Z73 Chain:A ((33-337)) | ------------VYYSLGIFIGICGIIGCGGNGIVIYLFTKT-KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISC-FLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGW--GAYT-LEGVLCNCSFDYISRDSTTRSNIL--CMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGE--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Z73.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -262544 for 2274 contacts (-115.5/contact) +
2D Compatibility (PS) -28339 + (NN) -8485 + (LL) 2248
1D Compatibility (HY) -20400 + (ID) 2250
Total energy: -319770.0 ( -140.62 by residue)
QMean score : 0.298
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