Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASSTTRGPRVSDLFSGLPPAVTTPANQSAEASAGNGSVAGADAPAVTPFQSLQLVHQLKGLIVLLYSVVVVVGLVGNCLLVLVIARVRRLHNVTNFLIGNLALSDVLMCTACVPLTLA-YAFEPRGWVFGGGLCHLVFFLQPVTVYVSVFTLTTIAVDRYVVLVHPLRRRISLRLSAYAVL---AIWALSAVLALPAAVHTYHVELKPHD--VRLCEEFWGSQERQRQLYAWGLLLVTYLLPLLVILLSYVRVSVKLRNRVVPGCVTQSQADWDRARRRRTFCLLVVIVVVFAVCWLPLHVFNL---LRDLDPHAIDPYAFGLVQLLCHWLAMSSACYNPFIYAWLHDSFREELRKLLVAWPRKIAPHGQNMTVSVVI |
| 4RWD Chain:A ((125-405)) | --------------------------------------------------------------ITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSAKYLMET--WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV-KALDFRTPAKAKLINICIWVLASGVGVPIMVMAVT---RPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR----LLSGSKEKDRSLRRITR-MVLVVVGAFVVCWAPIHIFVIVWTLVDIDRR--DPLVVAALH-LCIALGYANSSLNPVLYAFLDENFKRCFRQLC-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -262479 for 2057 contacts (-127.6/contact) +
2D Compatibility (PS) -28012 + (NN) -9563 + (LL) 5516
1D Compatibility (HY) -31600 + (ID) 4700
Total energy: -330838.0 ( -160.84 by residue)
QMean score : 0.296
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