Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCSDVTSAIAPCMSYATGQASSPSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSF----NGIS-----MGNAANIPGKCGVSVSFPINNNVNCDNLH
3OB4 Chain:A ((428-485))
-------------------------QERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17683 for 261 contacts (-67.8/contact) +
2D Compatibility (PS) -5238 + (NN) -2368 + (LL) 1864
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -25875.0 ( -99.14 by residue)
QMean score : 0.191
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: