Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVQCGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGF----PAVD-----FSRASALPAACGLSISFTIAPNMDCNQVTEELRI
3OB4 Chain:A ((428-485))
--------------------------QERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP------------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23997 for 261 contacts (-91.9/contact) +
2D Compatibility (PS) -4844 + (NN) 217 + (LL) 3472
1D Compatibility (HY) -400 + (ID) 450
Total energy: -26002.0 ( -99.62 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: