Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQ--Q-GCFCQFAKDPRYGRY---VN-------SPNARKAVSSCGIALP-TCH
3OB4 Chain:A ((427-489))
---------------------------HQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCD
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16952 for 255 contacts (-66.5/contact) +
2D Compatibility (PS) -4725 + (NN) 1673 + (LL) 992
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -20712.0 ( -81.22 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: