Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ICNLSDAGLQACKPAAAV-----RNPAD------TPSSECCDALAAADLPCLCRYKGSAGARVW-----VRF--YGIDLNRAMTLPGKCGLTLPAHC
2LVF Chain:A ((17-105))
-------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20581 for 417 contacts (-49.4/contact) +
2D Compatibility (PS) -7374 + (NN) -505 + (LL) 572
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -30738.0 ( -73.71 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: