Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KDECGATPPDQEAL--KLVPCVAAGKDPDS---------------------KPSDRCCAAVKEIGERSPACLCAVLLSKI----------VRRVGVKPEVAITIPKRCDLTDRPIGYKCGDYTMPSLQLKD
1PSY Chain:A ((16-116))
------QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16692 for 466 contacts (-35.8/contact) +
2D Compatibility (PS) -6933 + (NN) -3749 + (LL) 728
1D Compatibility (HY) 0 + (ID) 700
Total energy: -27346.0 ( -58.68 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: