Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGPAAGGAAVADPAGCQDDVVA--LNEACYKYVQKG---APTV----------PPSQECCDAVKSVDVPCVCSYLGSPGVRDNI-------------SMEKVFYVSQQCGVSIPGNCGGSKV
1SM7 Chain:A ((4-106))
--------------KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTL--KQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPF---
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55386 for 543 contacts (-102.0/contact) +
2D Compatibility (PS) -7877 + (NN) -1168 + (LL) 356
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -67225.0 ( -123.80 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: