Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GPAGCQDDVV--ALNEACYQYVQK-----GAPTVP------PSQECCDAVKSVDVPCVCSYLGSPGVRDN-------------ISMEKVFYVSQQCGVSIPGNCGGSMV
2LVF Chain:A ((6-105))
--EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLR-MMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC-----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22994 for 449 contacts (-51.2/contact) +
2D Compatibility (PS) -7386 + (NN) -83 + (LL) -108
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -35871.0 ( -79.89 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: