Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VPGQGTCQGDIEG--LMKECAVYVQRP---GPKV----------NPSEACCRVVKRSDIPCACGRITASVQQMI--------DMD----KVVHVTAFCGKPLAHGTKCGSYVVP
1SM7 Chain:A ((3-103))
----QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45013 for 510 contacts (-88.3/contact) +
2D Compatibility (PS) -7447 + (NN) 182 + (LL) 308
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -54520.0 ( -106.90 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: