Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAPSSAQGTTTPADASGAVPSCASKLVTCAGYLNTTDTPPESCCDPLKEAATTQAACMCAILMNK--AALQA-FGVA-----PEQGVLLAKRCGVTNDASTCAK
3OB4 Chain:A ((429-488))
----------------------------------------ERCCNELNEFE-NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-QRC--
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18141 for 272 contacts (-66.7/contact) +
2D Compatibility (PS) -5043 + (NN) 967 + (LL) 1456
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -23061.0 ( -84.78 by residue)
QMean score : 0.295
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: