Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNCGQVTSAMAPCVPYLMGR----G---P----------------LGGCCGGVKGLMGAAKTPADRKTACTCLKSAANSMK------G----IDAGKAAGLPAACGVNIPYKISPSTDCSKVQ
1PSY Chain:A ((25-119))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34766 for 463 contacts (-75.1/contact) +
2D Compatibility (PS) -6203 + (NN) -1196 + (LL) 1332
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -45683.0 ( -98.67 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: