Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQVTHNVAPCFNYVKSG---GA-------------------VPAACCKGVSNLNSMAKTTADRQQTCNCLKSAAGSIK---GL-------NANLAAGLPGKCGVNVPYKISTSTNCNNVK
1PSY Chain:A ((25-123))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQTR-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23301 for 502 contacts (-46.4/contact) +
2D Compatibility (PS) -6742 + (NN) -3504 + (LL) 1440
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -36457.0 ( -72.62 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: