Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVSSSLAPCIAYLQKGGT-PAPGCCNGVKSLVGAAQTTADKQAVCNCLKGAAGQVPGLNNQYAQSLPSLCGVNIPYKISTSTNCASIKF
1AFH Chain:A ((2-93))
ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN-
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66977 for 749 contacts (-89.4/contact) +
2D Compatibility (PS) -9013 + (NN) -186 + (LL) 132
1D Compatibility (HY) -7600 + (ID) 2650
Total energy: -86294.0 ( -115.21 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: