Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVTSTLAPCLPYLMNRGPLRNCCDGVKGLLGQAKTTVDRQAACTCLKSAASSFT------G----LNLGKAAALPNTCSVNIPYKISPSTDCSKVQ
1PNB Chain:B ((13-67))
------------------------QCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10883 for 236 contacts (-46.1/contact) +
2D Compatibility (PS) -4409 + (NN) 103 + (LL) 2404
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -15885.0 ( -67.31 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: