Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------VTCNPTELSSC--VPAITGGSKPSSTCCSKLK-VQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC-----------------------------------------
1HSS Chain:A ((5-124))
MCYPGQAFQVPALPACRPLLRLQCNGS--QVP-EAVLRDCCQQLAHISEWCRCGALYSMLDS--MYKEH--------G-AFPRCRREVVKLTAASITAVCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4332 for 296 contacts (-14.6/contact) +
2D Compatibility (PS) -5163 + (NN) 2758 + (LL) 824
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -8513.0 ( -28.76 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: