Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCSAAQLAACAPAIIS-------------GSPPTASCCSNLRAQEPCFCQYARNPAYSSYINSPNARRTLTSCGIAVPSC---
2CKX Chain:A ((578-660))
RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR-GEPVPQDLLDRVLAAHAYWSQQ
General information:
TITO was launched using:
RESULT:
Template:
2CKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15274 for 425 contacts (-35.9/contact) +
2D Compatibility (PS) -7304 + (NN) -3087 + (LL) 204
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -27111.0 ( -63.79 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_2CKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CKX-query.scw
PDB file :
Tito_Scwrl_2CKX.pdb
: