Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DKCGNQIQ--GLLNKCSPILLG-----KSP----------SAACCGLIRSADMGCVCPKVTPQIAKQI-------------NVSKVVSVVKSCGRNVPHRTRCGSIVTP
2LVF Chain:A ((7-101))
-ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33171 for 388 contacts (-85.5/contact) +
2D Compatibility (PS) -6465 + (NN) 62 + (LL) 436
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -43288.0 ( -111.57 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: