Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPQQSCTASL---TGLNVCAPFLV----PGS-PT--------ASTECCNAVQSINHDCMCNTMR-----------------------IAAQIPAQCNLPPLSCSAN
2LVF Chain:A ((5-107))
--QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPM-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36647 for 373 contacts (-98.2/contact) +
2D Compatibility (PS) -6890 + (NN) -4499 + (LL) -100
1D Compatibility (HY) -6400 + (ID) 950
Total energy: -55486.0 ( -148.76 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: