Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDEECLAGI---GNLISCDPYVI----PGANQGS-------PSKECCSALGGVKQSCYCTAID-----------------------IISNLPARCSLPAVNCA
2LVF Chain:A ((6-106))
--EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCP
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26838 for 368 contacts (-72.9/contact) +
2D Compatibility (PS) -6520 + (NN) 200 + (LL) 44
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -39764.0 ( -108.05 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: