Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHNIEKEAEKLAPCTKAAQDLKAPVSKSCCTVMEKKLK--------NPGCLCAIMLSHTAKNA-GVKPEVAVTIPKRCNIPVRPVGHKCGAFPLV
1BWO Chain:A ((2-78))
-------DCGHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA---RGIHNLNEDNARSIPPKCGVNLP------------
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17017 for 440 contacts (-38.7/contact) +
2D Compatibility (PS) -7057 + (NN) -4500 + (LL) 452
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -30722.0 ( -69.82 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: