Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SACSSTFFSALVQLIPCRAAVA----PF-SPIPP-----------NEACCNAIKAL--GQPCLCVLVNG-----PPIS-G-----VDRNMALQLPEKCTANFEPCDVMK
1W2Q Chain:A ((23-113))
-----------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRA-------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31712 for 328 contacts (-96.7/contact) +
2D Compatibility (PS) -6699 + (NN) -7659 + (LL) 1132
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -48738.0 ( -148.59 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: