Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACGSSYDLAACLPAAESD----IQ------PSAQCCTQLSSYLATDTPEECLCQTAYSPFFQ---S-------------GADIQ------FAIKIPQKCNLSYRAGIQCNGNTIPGGQ
1B1U Chain:A ((16-110))
------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI-----PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27790 for 384 contacts (-72.4/contact) +
2D Compatibility (PS) -6449 + (NN) -126 + (LL) 352
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -36013.0 ( -93.78 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: