Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEMSCIQNLLPCKPYLP----GTEPP----------PPVCCLPLKDMVAHQAQCLCSALANP--D-L-LK-DFN-----VTMDGALKLAKTCGASVDMSVCKNGNH
2LVF Chain:A ((16-108))
------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--PMRCPMG--
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20541 for 387 contacts (-53.1/contact) +
2D Compatibility (PS) -7156 + (NN) -2000 + (LL) 1180
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -30967.0 ( -80.02 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: