Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCSDVIKDLRPCVNYLTSG---TG---K---------------PPSACCAGASALQSAASSTADKKAACECIKSASKSL---N-P-------NPQLAQALPANCGISLPYTISPSVDCSKIS
1PSY Chain:A ((25-120))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16046 for 484 contacts (-33.2/contact) +
2D Compatibility (PS) -6845 + (NN) -4217 + (LL) 1524
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -29584.0 ( -61.12 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: