Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSGCTNVLI---SMAPCLSYVTGS----S--S---------TPSSSCCSQLASVVLSQPQCLCAALNG---GGA---SLG-LN--INETLALALPGACKVQTPPVSKCNGKFKNNFLPEI
1SM7 Chain:A ((5-106))
---CQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--IGTCPF----------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51099 for 496 contacts (-103.0/contact) +
2D Compatibility (PS) -7377 + (NN) -21 + (LL) 556
1D Compatibility (HY) -5200 + (ID) 700
Total energy: -63841.0 ( -128.71 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: