Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQPANCNGQLN---QLIPCLSYVQGQAT---------------QPAQSCCSGLKSIAGSNPACLCSLISANAGS-----IP-G--I--NSTLALELPAKCNLQGLNPSLCSVFISGFLPLR
1SM7 Chain:A ((4-106))
-----KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--IGTCPF---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54289 for 524 contacts (-103.6/contact) +
2D Compatibility (PS) -7361 + (NN) -358 + (LL) 984
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -66274.0 ( -126.48 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: