Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------SHNVGALASSCEESD--------------FLYKSLPCVKGGTV---MSTPSSQCCVAVRAMALECLCRLI---VSAT------------GASSE--QTVKNYVKTCKMKAPPGFKC------- |
| 2PGD Chain:? ((1-176)) | AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PGD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24788 for 424 contacts (-58.5/contact) +
2D Compatibility (PS) -8733 + (NN) -3972 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -41393.0 ( -97.62 by residue)
QMean score : 0.350
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