Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCQGSIQDLKICVPYVQKK----GPKIP---PSQACCDAIKGVDILCVCHHLPPDIGELI-------------------S----IEKVVFVLQVCREPLAPGTKCGT
1B1U Chain:A ((17-111))
--------LDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHGG----
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55648 for 412 contacts (-135.1/contact) +
2D Compatibility (PS) -6181 + (NN) 2418 + (LL) 344
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -64067.0 ( -155.50 by residue)
QMean score : 0.176
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: