Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSAAKCKEERRL--GINACKAVVYG----KS-------------PTPACCHRMRVTHLGCVCSVITPKLAALV------------DVNRMIELVKGCGRKLPRHYKCGSITFP
1SM7 Chain:A ((3-103))
----QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41913 for 502 contacts (-83.5/contact) +
2D Compatibility (PS) -7083 + (NN) 223 + (LL) 712
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -50711.0 ( -101.02 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: