Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCQGSIQDLKICVPYVQK-----KGPKIP------PSQACCDAIKGVDILCVCHHLPPDIGEL-------------ISIEKVVFVLQVCREPLAPGTKCGSKNIKALLS
2LVF Chain:A ((17-106))
-------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCP---------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39750 for 392 contacts (-101.4/contact) +
2D Compatibility (PS) -6834 + (NN) -2637 + (LL) 976
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -51695.0 ( -131.88 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: