Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSLSPAIFSIGPVSIHWYSLAYVLGIVFAYWHLHKLDEQKIFTKNFYDSLLTATIIGIILGGRLGFVLIYDPISYINNPIEILKTWKGGMSFHGGAIGVLCAVIISCRRYNIPIFYTLDLISCGVPIGLFLGRIGNFV-NGELFGRVTTMPWGMVFPESGDNLLRHPSQLYEAFFEGLLFFAIANSLFFLTRIRLYHGTLTGIAVIWYGTVR-----FVVEFFREPDYQVGYLWLDLTMGQLLSIFMTLLGIIVYLSALNSKFNTKSVA
1M4Z Chain:A ((1-217))
AMTMAKTL------------------KDLQGWEIITTDEQG------------------------------------NITEHYLKRSSDGIKLGRGD-----SVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPT---GEKFVDINIEDVKAYIKK-----VEPREAQEYLKDLTLP
General information:
TITO was launched using:
RESULT:
Template:
1M4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147771 for 1336 contacts (-110.6/contact) +
2D Compatibility (PS) -20827 + (NN) -1143 + (LL) 5408
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -169583.0 ( -126.93 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_1M4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M4Z-query.scw
PDB file :
Tito_Scwrl_1M4Z.pdb
: