Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKLSIYVTLSISLVLILLQVTVTFKDWDSYKEYIVQGLEKTYNAKVHIGGKVEVSLITPKLTVHNVYMQCNNNKEQKLSTLIGVNKIEVRPSILSLFLFSLQPKSITLLGMKSNRENFINIINAKTSSNAVDIVIKGSQVSLNNNFTDYDNIVNIEKVAIGKSKQFSGEIRVDSNDYDFSGKVNITKKNVHISVESNFINL---LFTGKKNQAGLQ---GKLTLTINNSSDFINDLAKITNLSFLAYVIPGENIEISSN---IDFNGNDFTATDLKIKSKSMQASGIIQNDRKSNHTNINISFSKVNLDSIR--NSSRRIIDIKDLLECFRKVVPRNLSLDFNIEASNIQYQNKILDKSHAILKFADGEIKVDMLLKFPGTNNVSHLSGKVSNSGTLSEFNGNLLVKGDNFKSFISCFFPSIKIKGNQKNQFT---LSSELHFAPRILSISNIRFLNDKEFLQGSIKVSHTKKHNVVGGRFSVHNLDADKYDYSLFSSLSKMGWLKNLRYDVSIKINANDFKLNDTKIKDLDFLLKMEKGKLVVDKIN-LSGEDCDINGS----TKILVDQRYTKPLLEVNLTGNKFNGDIFKLPSFIEVKRDSRNKINQIQWSTKQFDFLDNKESFDANVQINAIEFRVGQNVLKDFNLDAVVRNNTVTMRQVSYALEHGQVFFQGYLRSDSMYTKFLITNLDAKGIGKAIGIDNVDGRISLNGEIKAQGKSFHGWANNLSGEINLQAQEIEFTNVDFNSFITNLLNGKNKSEISTLAHDDIYNGSTLFENVIGKANIKNGVCSTSLQFRIDQASGSISSNLTLPNFALISLVRFFFILPGHSSPIYIDMHLDGPIWHPKMNFDVDQIFSTLKRIRSIKFIFAK |
| 4LXR Chain:A ((1-773)) | SFGRDACSEMSID---GLCQCAPIM----SEYEIICPANAENPTFRLTIQPKDYVQIMC-NLTDTTDYQQLPKK-----LRIGEVDRVQMRRCMLP------------------GHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLS----------HLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPEL-QILRLRAELQ----SLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVNLLSLDLSNN-RLTHLPDSLFAHTTNLT--------DLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTL-NLRNN-SIIFVYNDWKNTMLQLRELD-LSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDVNNNLVHVDLNDNPLVCD-CTILWFIQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQIE---PQTLICPLDFSKCPRGCNCHVRT---------------------YDKALVINCHSGNLTHVPRLPNLHKNMQ-LMELHLENNTLLRLPSA--------------NTPGYESVTSLHLAGNNLTSI---------DVDQLPTNL------------THLDISWNHLQMLNATVLGFLNWRSVKLSGNPWMCDCTAKPLLLFTQDNFERIGDRNEMMCVNAPTRMVEL-STNDICP- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LXR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80102 for 5724 contacts (-14.0/contact) +
2D Compatibility (PS) -75588 + (NN) 4403 + (LL) 8460
1D Compatibility (HY) -36400 + (ID) 5700
Total energy: -184927.0 ( -32.31 by residue)
QMean score : 0.144
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