Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLL---GVDNKYYTLSDCCGKNGFIVMFI-CNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKE-------NKFTFPYLIDSKQEVAKEYGAVC------TPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
3TJJ Chain:A ((76-242))
-----LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRG-KYLVFFFYPLDFTFV-PTEIIAFGDRLEEFRS-INTEVVACSVDS--------QFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPV-----G--RSVDETLRLVQAFQYTDKHG------------------
General information:
TITO was launched using:
RESULT:
Template:
3TJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123004 for 1072 contacts (-114.7/contact) +
2D Compatibility (PS) -16204 + (NN) -6314 + (LL) 2128
1D Compatibility (HY) -5600 + (ID) 900
Total energy: -149894.0 ( -139.83 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_3TJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TJJ-query.scw
PDB file :
Tito_Scwrl_3TJJ.pdb
: