Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFAVEQAKLAKKNDEIPIGAVIVSGDNIISFAHNIS---NDPTAHAEMLVIRQACELLSTSVLCNADMYVTLEPCPMCAQAISFARIKRLYFGAYNSKGGGIENGAKIFQFC--SHVPEVYGGVLETECSFLLKDFFEKLR--DSTNYY
2B3J Chain:B ((11-154))
MTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRAN------
General information:
TITO was launched using:
RESULT:
Template:
2B3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120319 for 1180 contacts (-102.0/contact) +
2D Compatibility (PS) -15189 + (NN) -10728 + (LL) -132
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -158968.0 ( -134.72 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_2B3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B3J-query.scw
PDB file :
Tito_Scwrl_2B3J.pdb
: