Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEK-DFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHAP------VRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWKID--RPILNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNIVLAKPKKKFLSTPEVFSKYGGNFSKPIEWRDDTEKDLLKLLK-ETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
| 2WW4 Chain:A ((1-263)) | -MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIR----LLTPV---EGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPVD-PP-EKWYLVAHP-GVSIPTPVIFKDPELPRNTP--KRS-----IETLLKCEFSNDCEVIARKRFREVDAVLSWLLE--Y-APSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLSP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147250 for 2078 contacts (-70.9/contact) +
2D Compatibility (PS) -27584 + (NN) -7075 + (LL) 876
1D Compatibility (HY) -12800 + (ID) 3800
Total energy: -197633.0 ( -95.11 by residue)
QMean score : 0.468
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