Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHELSHMVENELNLSLEQEFLYKVYQDIERNLKQANIFVQKIIGQVIFKEIQAYQAAKPRTSELFALF
1YP1 Chain:A ((140-148))
AHELGHNLGMLHDDGYSCDCDVCIMAPSLSSDPTKVFSNCSLILYEDFLSNEEPDCIDNA--------
General information:
TITO was launched using:
RESULT:
Template:
1YP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -679 for 27 contacts (-25.1/contact) +
2D Compatibility (PS) -815 + (NN) 207 + (LL) 548
1D Compatibility (HY) 0 + (ID) 200
Total energy: -939.0 ( -34.78 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1YP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YP1-query.scw
PDB file :
Tito_Scwrl_1YP1.pdb
: