Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDDFIRIKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLNIQDKPDVESITGLSPAISINQKSISKNPRSTVGTVTEIYDYLRLMYARIGIPYSPATGLPIAKQTVSQIVDTIMALPLETKIYILAPIVRGRKGEHLKEILEIKKQGYVRLKIDGEVHNIDDLPKLDENKKHNIFVVADRILVSDNIGNRLPSSIESALRLGHGLMYAEIMSLPDNHNSEYKDGQILTFSENFACPESGFTLEELEPRLFSFNSPYGACYLCNGLGKKLDIDIKLIVPDETLSISEGALRPV-----GSMSRQVHASYGFLKSAILSLAENRKFSLDIPWKNIDQKVKNVILF-------------------------------GSKETKFRGLVGILENQIDYD-ETLIERYCSVANCKECVGFRIRKEALTVKIDGRHIGEISRLS---IDEFLKWF--ENLPS-----KLTEQQKQISNKILNEIIKRLTFLKNVGLNYLTLDRESSTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHDEDTIMAADYAIDIGPGAGVNGGKIVAEGTPDQVQRSSKSITGQYLSGKKTISIPKRRKRATQYIKVVNACENNLKNIDVEFPIGNLICVTGISGGGKSSLVVETLYKYLARKMYDSSAKYGQ------------------CDKIEG-LEYIDKIIEIDQSPIGRTPASNPATYVGIFTHVRNWFAGLPESKARGYNIGRFSFNTKGGRCEACKGDGHLRVEMHFLPDVYVKCEQCKGRRYNRETLEVTYKGKSVSDVLDMTIDQACDFFDNLPMVKEKLVSLQEVGLGYIKLGQPSTTLSGGEAQRIKLSRELSKRSTGRTLYILDEPTTGLHFEDVNNLLKILHKLVDLGNTVIVIEHNLHVIKTADYIIDIGPEGGMKGGKVVATGTPEEIIDIPESITGKYLKPYLSKLIKV |
| 2VF8 Chain:B ((142-841)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSPNTPEGACPECHGLGRVYTVTEDSMVPDPSLTIRERAVAAWPQAWGGQNQRDILVTLGI--------------DVDVPWRELPEETRHWILFTDEQPVVPVYPGLTPAETQRALKKKMEPSYMGTFSSARRHVLHTFANTESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTE-PHTPREPAGWLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALA-------AHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRAALR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VF8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261707 for 5037 contacts (-52.0/contact) +
2D Compatibility (PS) -67998 + (NN) -21529 + (LL) 19888
1D Compatibility (HY) -48800 + (ID) 14600
Total energy: -394746.0 ( -78.37 by residue)
QMean score : 0.415
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