Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNIL-KYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDR-NPGGDTI-IGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3TIS Chain:C ((2-174))
-------DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHK---GNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLD
General information:
TITO was launched using:
RESULT:
Template:
3TIS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138452 for 1383 contacts (-100.1/contact) +
2D Compatibility (PS) -18073 + (NN) -2412 + (LL) 348
1D Compatibility (HY) -18000 + (ID) 3500
Total energy: -180089.0 ( -130.22 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3TIS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIS-query.scw
PDB file :
Tito_Scwrl_3TIS.pdb
: