Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRIQRNKIKVEIKKLSHGKDLPLPCYATMQSAGMDLYAALGNSIVLNPLERLLIPTGIVIVIPNGFEGQIRPRSGLAAKYGITVLNSPGTIDSDYRGEVKVCLINLSNQPYEIKRGDRIAQILIAPVFRVIWDDAERLCTEETERSAGGFGSSGR
1Q5H Chain:B ((21-142))
------------------------PTRGSARAAGYDLYSAYDYTI--PPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDV--GAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL--DDTERGSGGFG----
General information:
TITO was launched using:
RESULT:
Template:
1Q5H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59903 for 739 contacts (-81.1/contact) +
2D Compatibility (PS) -13394 + (NN) -5040 + (LL) 2104
1D Compatibility (HY) -10400 + (ID) 2700
Total energy: -89333.0 ( -120.88 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1Q5H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q5H-query.scw
PDB file :
Tito_Scwrl_1Q5H.pdb
: