Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLN---DKSNEITSKLVICPPFTSLPGNIEL--NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRL----PIH-GEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKK---------HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
1BTM Chain:B ((4-247))
---IIAGNWKMHKTLAEAVQFVEDVKGHVPPADEVIS--VVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGPLVGGASLEPASFLQLVEAGRH--
General information:
TITO was launched using:
RESULT:
Template:
1BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135888 for 1873 contacts (-72.6/contact) +
2D Compatibility (PS) -23822 + (NN) -7215 + (LL) 864
1D Compatibility (HY) -18000 + (ID) 4650
Total energy: -188711.0 ( -100.75 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BTM-query.scw
PDB file :
Tito_Scwrl_1BTM.pdb
: