Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNNPNIKLLYIRDLFAKECKEIEEYCILGKKQHIQISPEEGKLLSLFIKIHKVRSIVEIGTLYGYSSICMAKALPEYGHIYTIENNPKHFKIAKKNFNAFNMSNKITLIVGNALEKLAELSAKAPYDMIFIDADKAGYPKYLDWAESYIKQDGLIVADNTLLLNTVFLKSPPKEVLEKSWRAMREFNYRLSDEKKYCSILIPTDEGMTIALKLT
4PCA Chain:B ((47-226))
------------------------------------QLGTVEGQMLQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDEHPTEK-SSNAHASMRAFNDELANKEKYLSTIIPTSEGMMVSIKLT
General information:
TITO was launched using:
RESULT:
Template:
4PCA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112334 for 1466 contacts (-76.6/contact) +
2D Compatibility (PS) -19404 + (NN) -7151 + (LL) 3312
1D Compatibility (HY) -21200 + (ID) 4200
Total energy: -160977.0 ( -109.81 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_4PCA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PCA-query.scw
PDB file :
Tito_Scwrl_4PCA.pdb
: