Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQEDYFNFNKAVFNSIDSWNYS---NLSDLTVLQKVAALSNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK |
2REM Chain:A ((16-187)) | -----------------------------------------------DGRPFAPLAGKIEVVEIFGYTCPHCAHFDSKL-QAWGARQ--AKDVRFTLVPAVFGGVWDPFARAYLAADVLGVAKRSHTAMFEAIHEK-GSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAA-RAYALKVRPVGTPTIVVNGRY-----------MVTGHDFEDTLRITDYLVSRERAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2REM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112122 for 1350 contacts (-83.1/contact) +
2D Compatibility (PS) -18075 + (NN) -8552 + (LL) 5160
1D Compatibility (HY) 800 + (ID) 1300
Total energy: -134089.0 ( -99.33 by residue)
QMean score : 0.506
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