Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHT-GWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSAN-NISIYCAIIVKKVDEKTRQKTSINEILRD
3GOS Chain:B ((3-273))
--MQQLQNVIETAFERRADITPANVDTVTREAITHVIDLLDTGALRVAEKI-DGQWVTHQWLKKAVLLSFRINDNQVMEGAETRYYDKVPMKFAGYDEARFQREGFRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKTRSKVGINELLRT
General information:
TITO was launched using:
RESULT:
Template:
3GOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -236351 for 2175 contacts (-108.7/contact) +
2D Compatibility (PS) -29714 + (NN) -14177 + (LL) 300
1D Compatibility (HY) -30000 + (ID) 7200
Total energy: -317142.0 ( -145.81 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_3GOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GOS-query.scw
PDB file :
Tito_Scwrl_3GOS.pdb
: