Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVLVIGSGGREHALLWTLKKSPILTELYITPGRPAM-GNLGVLVNINIQNSIDMTRFCKRENIELVIIGPEQPIIDGLADNLVAEGINVFAPSQAAAKLEASKSFTKGICKQYGIPTAKYECFVDERLAKSFVRSNKIKFPLVVKANGIAAGKGVIVCNTENEAFSAIDSMLVEKKFGESGEEIIIEEFLVGEEVSFFALVDGLKVVTLGCAKDYKRVDENNDSRNTGGMGSYS-SPSIISKDMEQKIIQRIIYPTIQALANMGTPYRGVLFAGLITCKDSPKLLEYNVRFGDPEAQSMLPRFDASCDLLELMLSVAKGKLSAKTVELNSKATVCVVVASKGYPGDYQKGEIIKGLAKIESIPGVLVFHAGTKLDESGNWVSDGGRVLNIVGEGNTLEEAKSKVYSALNFLEWPGGFFRYDIGS |
3LP8 Chain:A ((22-439)) | MNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADI-IDIDINSTIEVIQVCKKEKIELVVIGPETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKH--KLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEGKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNI-ITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNEPKLLEYNVRFGDPETQSILP-RL-NSDFLKLLSLTAKGKLGNESVELSKKAALCVVVASRGYPGEYKKNSIINGIENIEKLPNVQLLHAGTRR-EGNNWVSDSGRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIGS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -290063 for 3772 contacts (-76.9/contact) +
2D Compatibility (PS) -47033 + (NN) -28158 + (LL) 816
1D Compatibility (HY) -48800 + (ID) 11900
Total energy: -425138.0 ( -112.71 by residue)
QMean score : 0.539
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