Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFFLPKNSKINKKGKVYPAPTKAKNVRRFQIYRWSADDKKN-PRVDTFFIDMDNCGSMVLDALIKIKDEIDPTLTFRRSCREGICGSCAMNIDGTNTLACTKSI-PDIKGDVKIYPLPHMYVIKDLVSDLSQFYEQYKSVNPWLQA-DKPNLLNQEYSQSPEDRKKLDGLSDCILCACCSTGCPNYWWNNDKFLGPAILLQAYRWIADSRDNKTDERLDALNDPFKLYRCHTIMSCTKTCPKGLNPAKAIAKIKQLMVERKGF
3AEG Chain:B ((9-246))
-------------------------PRIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKE-
General information:
TITO was launched using:
RESULT:
Template:
3AEG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144087 for 1773 contacts (-81.3/contact) +
2D Compatibility (PS) -25255 + (NN) -12818 + (LL) 1220
1D Compatibility (HY) -30400 + (ID) 7850
Total energy: -219190.0 ( -123.63 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3AEG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AEG-query.scw
PDB file :
Tito_Scwrl_3AEG.pdb
: