Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGALTGLWLSFTALSHLIIGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
1KCO Chain:A ((1-21))
------------------------------------------------------------------VQC-PHFCYELDYELCPDVCYV-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9688 for 95 contacts (-102.0/contact) +
2D Compatibility (PS) -2100 + (NN) -37 + (LL) 10456
1D Compatibility (HY) -3200 + (ID) 250
Total energy: -4819.0 ( -50.73 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_1KCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KCO-query.scw
PDB file :
Tito_Scwrl_1KCO.pdb
: